J3_4V7E_046

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AGC*GGACUAU*ACGGAAGUUU

Length

20 nucleotides

Bulged bases

4V7E|1|Ad|U|1396, 4V7E|1|Ad|U|1419, 4V7E|1|Ad|U|1420

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Ad|A|1340
4V7E|1|Ad|G|1341
4V7E|1|Ad|C|1342
*
4V7E|1|Ad|G|1392
4V7E|1|Ad|G|1393
4V7E|1|Ad|A|1394
4V7E|1|Ad|C|1395
4V7E|1|Ad|U|1396
4V7E|1|Ad|A|1397
4V7E|1|Ad|U|1398
*
4V7E|1|Ad|A|1412
4V7E|1|Ad|C|1413
4V7E|1|Ad|G|1414
4V7E|1|Ad|G|1415
4V7E|1|Ad|A|1416
4V7E|1|Ad|A|1417
4V7E|1|Ad|G|1418
4V7E|1|Ad|U|1419
4V7E|1|Ad|U|1420
4V7E|1|Ad|U|1421

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain BF

40S ribosomal protein S7

Chain BQ

40S ribosomal protein S9

Chain BR

40S ribosomal protein S17E

Chain BU

40S ribosomal protein S10

Chain Bd

40S ribosomal protein S14

Chain Bg

RACK1