J3_4V7E_048

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GU*GUACCCG*CUGC

Length

13 nucleotides

Bulged bases

4V7E|1|Aa|A|573, 4V7E|1|Aa|C|574, 4V7E|1|Aa|C|575, 4V7E|1|Aa|U|612

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7E|1|Aa|G|505
4V7E|1|Aa|U|506
*
4V7E|1|Aa|G|571
4V7E|1|Aa|U|572
4V7E|1|Aa|A|573
4V7E|1|Aa|C|574
4V7E|1|Aa|C|575
4V7E|1|Aa|C|576
4V7E|1|Aa|G|577
*
4V7E|1|Aa|C|611
4V7E|1|Aa|U|612
4V7E|1|Aa|G|613
4V7E|1|Aa|C|614

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CC

60S ribosomal protein L4

Chain CE

60S ribosomal protein L6E

Chain CF

60S ribosomal protein L30

Chain Ce

60S ribosomal protein L32E

Chain Cf

60S ribosomal protein L33E