J3_4V7I_003

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7I_003 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.2807

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V7I|1|A8|C|698
4V7I|1|A8|A|699
4V7I|1|A8|G|700
*
4V7I|1|A8|C|732
4V7I|1|A8|G|733
4V7I|1|A8|A|734
4V7I|1|A8|A|735
4V7I|1|A8|C|736
*
4V7I|1|A8|G|760
4V7I|1|A8|A|761
4V7I|1|A8|U|762
4V7I|1|A8|G|763

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain A6

50S ribosomal protein L2