3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
4V7I|1|A8|U|2334, 4V7I|1|A8|A|2336
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7I_008 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.4197
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

4V7I|1|A8|C|2295
4V7I|1|A8|U|2296
4V7I|1|A8|A|2297
4V7I|1|A8|A|2298
4V7I|1|A8|U|2299
*
4V7I|1|A8|A|2317
4V7I|1|A8|G|2318
4V7I|1|A8|G|2319
4V7I|1|A8|U|2320
4V7I|1|A8|U|2321
4V7I|1|A8|A|2322
4V7I|1|A8|G|2323
*
4V7I|1|A8|C|2332
4V7I|1|A8|A|2333
4V7I|1|A8|U|2334
4V7I|1|A8|A|2335
4V7I|1|A8|A|2336
4V7I|1|A8|G|2337

Current chains

Chain A8
23S ribosomal RNA

Nearby chains

Chain A7
5S ribosomal RNA; 5S rRNA
Chain AF
50S ribosomal protein L5
Chain AO
50S ribosomal protein L18
Chain AW
50S ribosomal protein L27

Coloring options:


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