J3_4V7I_027
3D structure
- PDB id
- 4V7I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ribosome-SecY complex.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.6 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4V7I|1|A8|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7I_027 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.2317
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V7I|1|A8|G|2282
4V7I|1|A8|C|2283
4V7I|1|A8|A|2284
*
4V7I|1|A8|U|2384
4V7I|1|A8|C|2385
4V7I|1|A8|A|2386
4V7I|1|A8|U|2387
4V7I|1|A8|A|2388
4V7I|1|A8|G|2389
4V7I|1|A8|U|2390
4V7I|1|A8|G|2391
4V7I|1|A8|A|2392
4V7I|1|A8|U|2393
4V7I|1|A8|C|2394
4V7I|1|A8|C|2395
*
4V7I|1|A8|G|2421
4V7I|1|A8|C|2422
4V7I|1|A8|U|2423
4V7I|1|A8|C|2424
4V7I|1|A8|A|2425
4V7I|1|A8|A|2426
4V7I|1|A8|C|2427
Current chains
- Chain A8
- 23S ribosomal RNA
Nearby chains
- Chain A1
- 50S ribosomal protein L33
- Chain A3
- 50S ribosomal protein L35
- Chain AL
- 50S ribosomal protein L15
- Chain AW
- 50S ribosomal protein L27
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