3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
CUG*CC*GAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7I_028 not in the Motif Atlas
Homologous match to J3_5J7L_047
Geometric discrepancy: 0.3735
The information below is about J3_5J7L_047
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30104.1
Basepair signature
cWW-F-F-cWW-cWW
Number of instances in this motif group
1

Unit IDs

4V7I|1|A8|C|2789
4V7I|1|A8|U|2790
4V7I|1|A8|G|2791
*
4V7I|1|A8|C|2805
4V7I|1|A8|C|2806
*
4V7I|1|A8|G|2892
4V7I|1|A8|A|2893
4V7I|1|A8|G|2894

Current chains

Chain A8
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4493 s