J3_4V7J_052

3D structure

PDB id

4V7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (precleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCCGC*GGACUGC*GAGGAAGGAGGG

Length

24 nucleotides

Bulged bases

4V7J|1|Aa|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7J|1|Aa|C|1114
4V7J|1|Aa|C|1115
4V7J|1|Aa|C|1116
4V7J|1|Aa|G|1117
4V7J|1|Aa|C|1118
*
4V7J|1|Aa|G|1155
4V7J|1|Aa|G|1156
4V7J|1|Aa|A|1157
4V7J|1|Aa|C|1158
4V7J|1|Aa|U|1159
4V7J|1|Aa|G|1160
4V7J|1|Aa|C|1161
*
4V7J|1|Aa|G|1175
4V7J|1|Aa|A|1176
4V7J|1|Aa|G|1177
4V7J|1|Aa|G|1178
4V7J|1|Aa|A|1179
4V7J|1|Aa|A|1180
4V7J|1|Aa|G|1181
4V7J|1|Aa|G|1182
4V7J|1|Aa|A|1183
4V7J|1|Aa|G|1184
4V7J|1|Aa|G|1185
4V7J|1|Aa|G|1186

Current chains

Chain Aa

RNA (1504-MER)

Nearby chains

Chain Ab

30S ribosomal protein S2

Chain Ac

30S ribosomal protein S3

Chain Ai

30S ribosomal protein S9

Chain Aj

30S ribosomal protein S10

Chain An

30S ribosomal protein S14 type Z