3D structure

PDB id
4V7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7K_026 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.1192
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

4V7K|1|Ba|C|936
4V7K|1|Ba|A|937
4V7K|1|Ba|A|938
4V7K|1|Ba|G|939
*
4V7K|1|Ba|C|1344
4V7K|1|Ba|U|1345
4V7K|1|Ba|A|1346
4V7K|1|Ba|G|1347
4V7K|1|Ba|U|1348
4V7K|1|Ba|A|1349
4V7K|1|Ba|A|1350
*
4V7K|1|Ba|U|1372
4V7K|1|Ba|G|1373
4V7K|1|Ba|A|1374
4V7K|1|Ba|A|1375
4V7K|1|Ba|U|1376
4V7K|1|Ba|A|1377
4V7K|1|Ba|C|1378
4V7K|1|Ba|G|1379

Current chains

Chain Ba
RNA (1504-MER)

Nearby chains

Chain Bg
30S ribosomal protein S7
Chain Bi
30S ribosomal protein S9
Chain Bw
Transfer RNA; tRNA

Coloring options:


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