J3_4V7K_028
3D structure
- PDB id
- 4V7K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUACC*GGGCGA
- Length
- 27 nucleotides
- Bulged bases
- 4V7K|1|Ba|A|975, 4V7K|1|Ba|G|976, 4V7K|1|Ba|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7K_028 not in the Motif Atlas
- Homologous match to J3_6CZR_062
- Geometric discrepancy: 0.1301
- The information below is about J3_6CZR_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59791.1
- Basepair signature
- cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V7K|1|Ba|U|955
4V7K|1|Ba|U|956
4V7K|1|Ba|U|957
4V7K|1|Ba|A|958
4V7K|1|Ba|A|959
4V7K|1|Ba|U|960
4V7K|1|Ba|U|961
4V7K|1|Ba|C|962
*
4V7K|1|Ba|G|973
4V7K|1|Ba|A|974
4V7K|1|Ba|A|975
4V7K|1|Ba|G|976
4V7K|1|Ba|A|977
4V7K|1|Ba|A|978
4V7K|1|Ba|C|979
4V7K|1|Ba|C|980
4V7K|1|Ba|U|981
4V7K|1|Ba|U|982
4V7K|1|Ba|A|983
4V7K|1|Ba|C|984
4V7K|1|Ba|C|985
*
4V7K|1|Ba|G|1220
4V7K|1|Ba|G|1221
4V7K|1|Ba|G|1222
4V7K|1|Ba|C|1223
4V7K|1|Ba|G|1224
4V7K|1|Ba|A|1225
Current chains
- Chain Ba
- RNA (1504-MER)
Nearby chains
- Chain Bj
- 30S ribosomal protein S10
- Chain Bm
- 30S ribosomal protein S13
- Chain Bn
- 30S ribosomal protein S14 type Z
- Chain Bs
- 30S ribosomal protein S19
- Chain By
- Toxin relE
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