3D structure

PDB id
4V7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
UAAAC*GGGUCGG*CG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7K_037 not in the Motif Atlas
Homologous match to J3_9DFE_005
Geometric discrepancy: 0.1077
The information below is about J3_9DFE_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_97971.2
Basepair signature
cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

4V7K|1|AA|U|269
4V7K|1|AA|A|270
4V7K|1|AA|A|271
4V7K|1|AA|A|271|||A
4V7K|1|AA|C|271|||B
*
4V7K|1|AA|G|271|||V
4V7K|1|AA|G|271|||W
4V7K|1|AA|G|271|||X
4V7K|1|AA|U|271|||Y
4V7K|1|AA|C|271|||Z
4V7K|1|AA|G|272
4V7K|1|AA|G|272|||B
*
4V7K|1|AA|C|366
4V7K|1|AA|G|370

Current chains

Chain AA
RNA (2848-MER)

Nearby chains

Chain AI
50S ribosomal protein L9

Coloring options:


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