J3_4V7K_058

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7K_058 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0887

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V7K|1|BA|G|1424
4V7K|1|BA|G|1425
4V7K|1|BA|G|1426
4V7K|1|BA|A|1427
4V7K|1|BA|C|1428
4V7K|1|BA|G|1429
*
4V7K|1|BA|C|1564
4V7K|1|BA|C|1565
*
4V7K|1|BA|G|1568
4V7K|1|BA|A|1569
4V7K|1|BA|A|1570
4V7K|1|BA|A|1571
4V7K|1|BA|A|1572
4V7K|1|BA|G|1573
4V7K|1|BA|C|1574

Current chains

Chain BA

RNA (2848-MER)

Nearby chains

Chain BD

50S ribosomal protein L2