J3_4V7K_063
3D structure
- PDB id
- 4V7K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 4V7K|1|Ba|C|48, 4V7K|1|Ba|A|50, 4V7K|1|Ba|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7K_063 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0726
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V7K|1|Ba|G|46
4V7K|1|Ba|C|47
4V7K|1|Ba|C|48
4V7K|1|Ba|U|49
4V7K|1|Ba|A|50
4V7K|1|Ba|A|51
4V7K|1|Ba|G|52
*
4V7K|1|Ba|U|359
4V7K|1|Ba|A|360
4V7K|1|Ba|G|361
4V7K|1|Ba|G|362
4V7K|1|Ba|A|363
4V7K|1|Ba|A|364
4V7K|1|Ba|U|365
4V7K|1|Ba|C|366
4V7K|1|Ba|U|367
*
4V7K|1|Ba|A|393
4V7K|1|Ba|G|394
4V7K|1|Ba|C|395
Current chains
- Chain Ba
- RNA (1504-MER)
Nearby chains
- Chain Bl
- 30S ribosomal protein S12
- Chain Bp
- 30S ribosomal protein S16
Coloring options: