J3_4V7L_070

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

4V7L|1|AA|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7L_070 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.3051

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

4V7L|1|AA|U|1073
4V7L|1|AA|G|1074
*
4V7L|1|AA|U|1083
4V7L|1|AA|G|1084
4V7L|1|AA|U|1085
4V7L|1|AA|U|1086
4V7L|1|AA|G|1087
*
4V7L|1|AA|C|1098
4V7L|1|AA|G|1099
4V7L|1|AA|C|1100
4V7L|1|AA|A|1101
4V7L|1|AA|A|1102

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AE

30S ribosomal protein S5