J3_4V7M_057

3D structure

PDB id

4V7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of Capreomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUUGACAUGCUAGGGAACC*GGGUGCCCCGCGAGGGGAGCCCUAGCACAG*CUUACG

Length

55 nucleotides

Bulged bases

4V7M|1|CA|G|1001|||A, 4V7M|1|CA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7M|1|CA|C|990
4V7M|1|CA|U|991
4V7M|1|CA|U|992
4V7M|1|CA|G|993
4V7M|1|CA|A|994
4V7M|1|CA|C|995
4V7M|1|CA|A|996
4V7M|1|CA|U|997
4V7M|1|CA|G|998
4V7M|1|CA|C|999
4V7M|1|CA|U|1000
4V7M|1|CA|A|1001
4V7M|1|CA|G|1001|||A
4V7M|1|CA|G|1002
4V7M|1|CA|G|1003
4V7M|1|CA|A|1004
4V7M|1|CA|A|1005
4V7M|1|CA|C|1006
4V7M|1|CA|C|1007
*
4V7M|1|CA|G|1022
4V7M|1|CA|G|1023
4V7M|1|CA|G|1024
4V7M|1|CA|U|1025
4V7M|1|CA|G|1026
4V7M|1|CA|C|1027
4V7M|1|CA|C|1028
4V7M|1|CA|C|1029
4V7M|1|CA|C|1030
4V7M|1|CA|G|1030|||A
4V7M|1|CA|C|1030|||B
4V7M|1|CA|G|1030|||C
4V7M|1|CA|A|1030|||D
4V7M|1|CA|G|1031
4V7M|1|CA|G|1032
4V7M|1|CA|G|1033
4V7M|1|CA|G|1034
4V7M|1|CA|A|1035
4V7M|1|CA|G|1036
4V7M|1|CA|C|1037
4V7M|1|CA|C|1038
4V7M|1|CA|C|1039
4V7M|1|CA|U|1040
4V7M|1|CA|A|1041
4V7M|1|CA|G|1042
4V7M|1|CA|C|1043
4V7M|1|CA|A|1044
4V7M|1|CA|C|1045
4V7M|1|CA|A|1046
4V7M|1|CA|G|1047
*
4V7M|1|CA|C|1210
4V7M|1|CA|U|1211
4V7M|1|CA|U|1212
4V7M|1|CA|A|1213
4V7M|1|CA|C|1214
4V7M|1|CA|G|1215

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain CC

30S ribosomal protein S3

Chain CN

30S ribosomal protein S14