J3_4V7P_008

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CGC*GGAC*GGAG

Length

11 nucleotides

Bulged bases

4V7P|1|AA|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7P_008 not in the Motif Atlas

Homologous match to J3_4LFB_008

Geometric discrepancy: 0.1875

The information below is about J3_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82365.4

Basepair signature

cWW-F-cWW-cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V7P|1|AA|C|1116
4V7P|1|AA|G|1117
4V7P|1|AA|C|1118
*
4V7P|1|AA|G|1155
4V7P|1|AA|G|1156
4V7P|1|AA|A|1157
4V7P|1|AA|C|1158
*
4V7P|1|AA|G|1181
4V7P|1|AA|G|1182
4V7P|1|AA|A|1183
4V7P|1|AA|G|1184

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14