3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
CGAGCUA*UAG*CGAG
Length
14 nucleotides
Bulged bases
4V7P|1|CA|G|686, 4V7P|1|CA|G|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7P_019 not in the Motif Atlas
Homologous match to J3_7RQB_004
Geometric discrepancy: 0.1078
The information below is about J3_7RQB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.4
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

4V7P|1|CA|C|683
4V7P|1|CA|G|684
4V7P|1|CA|A|685
4V7P|1|CA|G|686
4V7P|1|CA|C|687
4V7P|1|CA|U|688
4V7P|1|CA|A|689
*
4V7P|1|CA|U|773
4V7P|1|CA|A|774
4V7P|1|CA|G|775
*
4V7P|1|CA|C|791
4V7P|1|CA|G|792
4V7P|1|CA|A|793
4V7P|1|CA|G|794

Current chains

Chain CA
23S ribosomal RNA

Nearby chains

Chain C4
50S ribosomal protein L34
Chain CC
50S ribosomal protein L2

Coloring options:


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