J3_4V7P_021

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7P_021 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.2666

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

4V7P|1|CA|G|1055
4V7P|1|CA|G|1056
4V7P|1|CA|A|1057
*
4V7P|1|CA|U|1081
4V7P|1|CA|U|1082
4V7P|1|CA|U|1083
4V7P|1|CA|A|1084
4V7P|1|CA|A|1085
4V7P|1|CA|A|1086
4V7P|1|CA|G|1087
*
4V7P|1|CA|C|1102
4V7P|1|CA|A|1103
4V7P|1|CA|C|1104

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CI

50S ribosomal protein L10