J3_4V7P_032

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7P_032 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.201

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4V7P|1|DA|C|990
4V7P|1|DA|U|991
4V7P|1|DA|U|992
4V7P|1|DA|G|993
*
4V7P|1|DA|C|1045
4V7P|1|DA|A|1046
4V7P|1|DA|G|1047
*
4V7P|1|DA|C|1210
4V7P|1|DA|U|1211
4V7P|1|DA|U|1212
4V7P|1|DA|A|1213
4V7P|1|DA|C|1214
4V7P|1|DA|G|1215

Current chains

Chain DA

16S rRNA (1504-MER)

Nearby chains

Chain DN

30S ribosomal protein S14

Chain DV

Peptide chain release factor 1