3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
CGUCAG*CGCAACC*GACGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V7P_034 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.1443
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4V7P|1|DA|C|1063
4V7P|1|DA|G|1064
4V7P|1|DA|U|1065
4V7P|1|DA|C|1066
4V7P|1|DA|A|1067
4V7P|1|DA|G|1068
*
4V7P|1|DA|C|1107
4V7P|1|DA|G|1108
4V7P|1|DA|C|1109
4V7P|1|DA|A|1110
4V7P|1|DA|A|1111
4V7P|1|DA|C|1112
4V7P|1|DA|C|1113
*
4V7P|1|DA|G|1187
4V7P|1|DA|A|1188
4V7P|1|DA|C|1189
4V7P|1|DA|G|1190
4V7P|1|DA|A|1191
4V7P|1|DA|C|1192
4V7P|1|DA|G|1193

Current chains

Chain DA
16S rRNA (1504-MER)

Nearby chains

Chain DB
30S ribosomal protein S2
Chain DC
30S ribosomal protein S3
Chain DE
30S ribosomal protein S5
Chain DI
30S ribosomal protein S9
Chain DJ
30S ribosomal protein S10
Chain DN
30S ribosomal protein S14

Coloring options:


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