J3_4V7P_057

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7P_057 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0929

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

4V7P|1|CA|G|30
4V7P|1|CA|C|31
*
4V7P|1|CA|G|474
4V7P|1|CA|U|475
4V7P|1|CA|G|476
4V7P|1|CA|A|477
4V7P|1|CA|A|478
4V7P|1|CA|A|479
4V7P|1|CA|A|480
4V7P|1|CA|G|481
*
4V7P|1|CA|C|509
4V7P|1|CA|C|510

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CQ

50S ribosomal protein L20

Chain CS

50S ribosomal protein L22

Chain CU

50S ribosomal protein L24