J3_4V7P_067

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CCAUAG*CG*UCG

Length

11 nucleotides

Bulged bases

4V7P|1|CB|A|13, 4V7P|1|CB|U|14, 4V7P|1|CB|C|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7P_067 not in the Motif Atlas

Homologous match to J3_9DFE_020

Geometric discrepancy: 0.336

The information below is about J3_9DFE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12003.2

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4V7P|1|CB|C|11
4V7P|1|CB|C|12
4V7P|1|CB|A|13
4V7P|1|CB|U|14
4V7P|1|CB|A|15
4V7P|1|CB|G|16
*
4V7P|1|CB|C|68
4V7P|1|CB|G|69
*
4V7P|1|CB|U|107
4V7P|1|CB|C|108
4V7P|1|CB|G|109

Current chains

Chain CB

5S ribosomal RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain CV

50S ribosomal protein L25

Chain CW

50S ribosomal protein L27