J3_4V7R_002
3D structure
- PDB id
- 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 4V7R|1|A1|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7R_002 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1839
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V7R|1|A1|A|881
4V7R|1|A1|U|882
4V7R|1|A1|C|883
4V7R|1|A1|A|884
*
4V7R|1|A1|U|928
4V7R|1|A1|A|929
4V7R|1|A1|A|930
4V7R|1|A1|C|931
4V7R|1|A1|U|932
4V7R|1|A1|A|933
4V7R|1|A1|C|934
4V7R|1|A1|U|935
4V7R|1|A1|G|936
*
4V7R|1|A1|C|943
4V7R|1|A1|A|944
4V7R|1|A1|U|945
4V7R|1|A1|U|946
4V7R|1|A1|U|947
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain AH
- 40S ribosomal protein S14-A
- Chain Ac
- Unassigned secondary structure
- Chain Af
- Unassigned secondary structure
- Chain Bg
- 60S ribosomal protein L43
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