J3_4V7R_023

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CCAUAU*AGC*GUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|B2|C|9
4V7R|1|B2|C|10
4V7R|1|B2|A|11
4V7R|1|B2|U|12
4V7R|1|B2|A|13
4V7R|1|B2|U|14
*
4V7R|1|B2|A|66
4V7R|1|B2|G|67
4V7R|1|B2|C|68
*
4V7R|1|B2|G|110
4V7R|1|B2|U|111
4V7R|1|B2|G|112

Current chains

Chain B2

5S ribosomal RNA

Nearby chains

Chain B1

Large subunit ribosomal RNA; LSU rRNA

Chain BE

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L10

Chain BT

60S ribosomal protein L21-A