J3_4V7R_027

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

4V7R|1|C1|G|1584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|C1|C|1161
4V7R|1|C1|C|1162
4V7R|1|C1|A|1163
4V7R|1|C1|G|1164
*
4V7R|1|C1|C|1581
4V7R|1|C1|U|1582
4V7R|1|C1|A|1583
4V7R|1|C1|G|1584
4V7R|1|C1|U|1585
4V7R|1|C1|A|1586
4V7R|1|C1|A|1587
*
4V7R|1|C1|U|1609
4V7R|1|C1|G|1610
4V7R|1|C1|A|1611
4V7R|1|C1|U|1612
4V7R|1|C1|U|1613
4V7R|1|C1|A|1614
4V7R|1|C1|C|1615
4V7R|1|C1|G|1616

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CD

40S ribosomal protein S5

Chain CJ

40S ribosomal protein S16

Chain CR

40S ribosomal protein S28-A