J3_4V7R_030

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

4V7R|1|C1|G|1445, 4V7R|1|C1|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|C1|C|1215
4V7R|1|C1|C|1216
4V7R|1|C1|A|1217
4V7R|1|C1|G|1218
4V7R|1|C1|A|1219
4V7R|1|C1|C|1220
*
4V7R|1|C1|G|1263
4V7R|1|C1|G|1264
4V7R|1|C1|G|1265
4V7R|1|C1|U|1266
4V7R|1|C1|G|1267
*
4V7R|1|C1|U|1442
4V7R|1|C1|U|1443
4V7R|1|C1|A|1444
4V7R|1|C1|G|1445
4V7R|1|C1|A|1446
4V7R|1|C1|C|1447
4V7R|1|C1|G|1448

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain CK

40S ribosomal protein S17-A

Chain CS

40S ribosomal protein S29-A