J3_4V7R_034

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CAAAU*AUUUGGAGAG*UUCGAAG

Length

22 nucleotides

Bulged bases

4V7R|1|D1|A|116, 4V7R|1|D1|U|262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|D1|C|113
4V7R|1|D1|A|114
4V7R|1|D1|A|115
4V7R|1|D1|A|116
4V7R|1|D1|U|117
*
4V7R|1|D1|A|151
4V7R|1|D1|U|152
4V7R|1|D1|U|153
4V7R|1|D1|U|154
4V7R|1|D1|G|155
4V7R|1|D1|G|156
4V7R|1|D1|A|157
4V7R|1|D1|G|158
4V7R|1|D1|A|159
4V7R|1|D1|G|160
*
4V7R|1|D1|U|261
4V7R|1|D1|U|262
4V7R|1|D1|C|263
4V7R|1|D1|G|264
4V7R|1|D1|A|265
4V7R|1|D1|A|266
4V7R|1|D1|G|267

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DH

60S ribosomal protein L8-A

Chain DO

60S ribosomal protein L15-A