J3_4V7R_035

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AUCAGU*GACUGAGGACUGCG*CAAGGAU

Length

27 nucleotides

Bulged bases

4V7R|1|D1|A|589, 4V7R|1|D1|G|590, 4V7R|1|D1|A|611

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|D1|A|501
4V7R|1|D1|U|502
4V7R|1|D1|C|503
4V7R|1|D1|A|504
4V7R|1|D1|G|505
4V7R|1|D1|U|506
*
4V7R|1|D1|G|584
4V7R|1|D1|A|585
4V7R|1|D1|C|586
4V7R|1|D1|U|587
4V7R|1|D1|G|588
4V7R|1|D1|A|589
4V7R|1|D1|G|590
4V7R|1|D1|G|591
4V7R|1|D1|A|592
4V7R|1|D1|C|593
4V7R|1|D1|U|594
4V7R|1|D1|G|595
4V7R|1|D1|C|596
4V7R|1|D1|G|597
*
4V7R|1|D1|C|606
4V7R|1|D1|A|607
4V7R|1|D1|A|608
4V7R|1|D1|G|609
4V7R|1|D1|G|610
4V7R|1|D1|A|611
4V7R|1|D1|U|612

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DF

60S ribosomal protein L6-A

Chain DG

60S ribosomal protein L7-A

Chain Db

60S ribosomal protein L32