3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
AGCU*ACGUUCUAGCAUUCAAG*UGAU
Length
25 nucleotides
Bulged bases
4V7R|1|D1|U|2550, 4V7R|1|D1|U|2551, 4V7R|1|D1|C|2552, 4V7R|1|D1|U|2553, 4V7R|1|D1|A|2554, 4V7R|1|D1|G|2555, 4V7R|1|D1|U|2559, 4V7R|1|D1|C|2560
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V7R|1|D1|A|2529
4V7R|1|D1|G|2530
4V7R|1|D1|C|2531
4V7R|1|D1|U|2532
*
4V7R|1|D1|A|2547
4V7R|1|D1|C|2548
4V7R|1|D1|G|2549
4V7R|1|D1|U|2550
4V7R|1|D1|U|2551
4V7R|1|D1|C|2552
4V7R|1|D1|U|2553
4V7R|1|D1|A|2554
4V7R|1|D1|G|2555
4V7R|1|D1|C|2556
4V7R|1|D1|A|2557
4V7R|1|D1|U|2558
4V7R|1|D1|U|2559
4V7R|1|D1|C|2560
4V7R|1|D1|A|2561
4V7R|1|D1|A|2562
4V7R|1|D1|G|2563
*
4V7R|1|D1|U|2578
4V7R|1|D1|G|2579
4V7R|1|D1|A|2580
4V7R|1|D1|U|2581

Current chains

Chain D1
25S ribosomal RNA

Nearby chains

Chain DB
60S ribosomal protein L2
Chain DZ
60S ribosomal protein L30
Chain Dg
60S ribosomal protein L43
Chain Dj
Unassigned secondary structure

Coloring options:

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