J3_4V7R_042
3D structure
- PDB id
- 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 4V7R|1|D1|U|2550, 4V7R|1|D1|U|2551, 4V7R|1|D1|C|2552, 4V7R|1|D1|U|2553, 4V7R|1|D1|A|2554, 4V7R|1|D1|G|2555, 4V7R|1|D1|U|2559, 4V7R|1|D1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7R|1|D1|A|2529
4V7R|1|D1|G|2530
4V7R|1|D1|C|2531
4V7R|1|D1|U|2532
*
4V7R|1|D1|A|2547
4V7R|1|D1|C|2548
4V7R|1|D1|G|2549
4V7R|1|D1|U|2550
4V7R|1|D1|U|2551
4V7R|1|D1|C|2552
4V7R|1|D1|U|2553
4V7R|1|D1|A|2554
4V7R|1|D1|G|2555
4V7R|1|D1|C|2556
4V7R|1|D1|A|2557
4V7R|1|D1|U|2558
4V7R|1|D1|U|2559
4V7R|1|D1|C|2560
4V7R|1|D1|A|2561
4V7R|1|D1|A|2562
4V7R|1|D1|G|2563
*
4V7R|1|D1|U|2578
4V7R|1|D1|G|2579
4V7R|1|D1|A|2580
4V7R|1|D1|U|2581
Current chains
- Chain D1
- 25S ribosomal RNA
Nearby chains
- Chain DB
- 60S ribosomal protein L2
- Chain DZ
- 60S ribosomal protein L30
- Chain Dg
- 60S ribosomal protein L43
- Chain Dj
- Unassigned secondary structure
Coloring options: