J3_4V7R_045

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CAU*AGAUGUA*UCUG

Length

14 nucleotides

Bulged bases

4V7R|1|D1|U|3317, 4V7R|1|D1|G|3318, 4V7R|1|D1|U|3319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|D1|C|3298
4V7R|1|D1|A|3299
4V7R|1|D1|U|3300
*
4V7R|1|D1|A|3314
4V7R|1|D1|G|3315
4V7R|1|D1|A|3316
4V7R|1|D1|U|3317
4V7R|1|D1|G|3318
4V7R|1|D1|U|3319
4V7R|1|D1|A|3320
*
4V7R|1|D1|U|3387
4V7R|1|D1|C|3388
4V7R|1|D1|U|3389
4V7R|1|D1|G|3390

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DC

60S ribosomal protein L3

Chain DQ

60S ribosomal protein L17-A

Chain Da

60S ribosomal protein L31-A