3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
CCGAUAGCGAACAAGUAC*GGAAAG*CUUGG
Length
29 nucleotides
Bulged bases
4V7R|1|B1|U|343, 4V7R|1|B1|A|351, 4V7R|1|B3|U|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V7R|1|B1|C|339
4V7R|1|B1|C|340
4V7R|1|B1|G|341
4V7R|1|B1|A|342
4V7R|1|B1|U|343
4V7R|1|B1|A|344
4V7R|1|B1|G|345
4V7R|1|B1|C|346
4V7R|1|B1|G|347
4V7R|1|B1|A|348
4V7R|1|B1|A|349
4V7R|1|B1|C|350
4V7R|1|B1|A|351
4V7R|1|B1|A|352
4V7R|1|B1|G|353
4V7R|1|B1|U|354
4V7R|1|B1|A|355
4V7R|1|B1|C|356
*
4V7R|1|B1|G|363
4V7R|1|B1|G|364
4V7R|1|B1|A|365
4V7R|1|B1|A|366
4V7R|1|B1|A|367
4V7R|1|B1|G|368
*
4V7R|1|B3|C|21
4V7R|1|B3|U|22
4V7R|1|B3|U|23
4V7R|1|B3|G|24
4V7R|1|B3|G|25

Current chains

Chain B1
25S ribosomal RNA
Chain B3
5.8S ribosomal RNA

Nearby chains

Chain BD
60S ribosomal protein L4-A
Chain BX
60S ribosomal protein L26-A
Chain Bd
60S ribosomal protein L37-A
Chain Be
60S ribosomal protein L39

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2114 s