J3_4V7R_056

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

AGAUGG*CGUUUCAAAGG*CCACCAU

Length

24 nucleotides

Bulged bases

4V7R|1|B1|G|1541, 4V7R|1|B1|U|1554, 4V7R|1|B1|U|1555, 4V7R|1|B1|C|1556, 4V7R|1|B1|A|1557, 4V7R|1|B1|A|1558, 4V7R|1|B1|A|1580, 4V7R|1|B1|C|1582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|B1|A|1537
4V7R|1|B1|G|1538
4V7R|1|B1|A|1539
4V7R|1|B1|U|1540
4V7R|1|B1|G|1541
4V7R|1|B1|G|1542
*
4V7R|1|B1|C|1551
4V7R|1|B1|G|1552
4V7R|1|B1|U|1553
4V7R|1|B1|U|1554
4V7R|1|B1|U|1555
4V7R|1|B1|C|1556
4V7R|1|B1|A|1557
4V7R|1|B1|A|1558
4V7R|1|B1|A|1559
4V7R|1|B1|G|1560
4V7R|1|B1|G|1561
*
4V7R|1|B1|C|1578
4V7R|1|B1|C|1579
4V7R|1|B1|A|1580
4V7R|1|B1|C|1581
4V7R|1|B1|C|1582
4V7R|1|B1|A|1583
4V7R|1|B1|U|1584

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain B3

5.8S ribosomal RNA; 5.8S rRNA

Chain BB

60S ribosomal protein L2

Chain BH

60S ribosomal protein L8-A

Chain BO

60S ribosomal protein L15-A

Chain Bd

60S ribosomal protein L37-A