J3_4V7R_060

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA

Length

30 nucleotides

Bulged bases

4V7R|1|B1|A|3172, 4V7R|1|B1|G|3173, 4V7R|1|B1|A|3174, 4V7R|1|B1|A|3213, 4V7R|1|B1|U|3214, 4V7R|1|B1|A|3215, 4V7R|1|B1|G|3216, 4V7R|1|B1|G|3266, 4V7R|1|B1|A|3267, 4V7R|1|B1|A|3268, 4V7R|1|B1|U|3269, 4V7R|1|B1|U|3270, 4V7R|1|B1|G|3271, 4V7R|1|B1|C|3272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|B1|U|3171
4V7R|1|B1|A|3172
4V7R|1|B1|G|3173
4V7R|1|B1|A|3174
4V7R|1|B1|U|3175
4V7R|1|B1|G|3176
*
4V7R|1|B1|C|3212
4V7R|1|B1|A|3213
4V7R|1|B1|U|3214
4V7R|1|B1|A|3215
4V7R|1|B1|G|3216
4V7R|1|B1|C|3217
4V7R|1|B1|A|3218
4V7R|1|B1|G|3219
4V7R|1|B1|G|3220
*
4V7R|1|B1|C|3265
4V7R|1|B1|G|3266
4V7R|1|B1|A|3267
4V7R|1|B1|A|3268
4V7R|1|B1|U|3269
4V7R|1|B1|U|3270
4V7R|1|B1|G|3271
4V7R|1|B1|C|3272
4V7R|1|B1|A|3273
4V7R|1|B1|A|3274
4V7R|1|B1|U|3275
4V7R|1|B1|G|3276
4V7R|1|B1|U|3277
4V7R|1|B1|C|3278
4V7R|1|B1|A|3279

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain BN

60S ribosomal protein L14-A

Chain BP

60S ribosomal protein L16-A

Chain Bh

Unassigned secondary structure