J3_4V7R_069

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GAUGAAAAGAAC*GAGUGAAAAAGUACG*CUC

Length

30 nucleotides

Bulged bases

4V7R|1|D1|A|398, 4V7R|1|D1|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|D1|G|368
4V7R|1|D1|A|369
4V7R|1|D1|U|370
4V7R|1|D1|G|371
4V7R|1|D1|A|372
4V7R|1|D1|A|373
4V7R|1|D1|A|374
4V7R|1|D1|A|375
4V7R|1|D1|G|376
4V7R|1|D1|A|377
4V7R|1|D1|A|378
4V7R|1|D1|C|379
*
4V7R|1|D1|G|390
4V7R|1|D1|A|391
4V7R|1|D1|G|392
4V7R|1|D1|U|393
4V7R|1|D1|G|394
4V7R|1|D1|A|395
4V7R|1|D1|A|396
4V7R|1|D1|A|397
4V7R|1|D1|A|398
4V7R|1|D1|A|399
4V7R|1|D1|G|400
4V7R|1|D1|U|401
4V7R|1|D1|A|402
4V7R|1|D1|C|403
4V7R|1|D1|G|404
*
4V7R|1|D3|C|19
4V7R|1|D3|U|20
4V7R|1|D3|C|21

Current chains

Chain D1

25S ribosomal RNA

Chain D3

5.8S ribosomal RNA

Nearby chains

Chain DD

60S ribosomal protein L4-A

Chain DQ

60S ribosomal protein L17-A

Chain DX

60S ribosomal protein L26-A

Chain De

60S ribosomal protein L39