J3_4V7R_070

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

4V7R|1|D1|G|1063, 4V7R|1|D1|A|1065, 4V7R|1|D1|U|1094, 4V7R|1|D1|U|1096, 4V7R|1|D1|G|1097

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|D1|U|986
4V7R|1|D1|U|987
*
4V7R|1|D1|A|1062
4V7R|1|D1|G|1063
4V7R|1|D1|A|1064
4V7R|1|D1|A|1065
4V7R|1|D1|G|1066
*
4V7R|1|D1|C|1092
4V7R|1|D1|A|1093
4V7R|1|D1|U|1094
4V7R|1|D1|U|1095
4V7R|1|D1|U|1096
4V7R|1|D1|G|1097
4V7R|1|D1|A|1098

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DG

60S ribosomal protein L7-A

Chain DT

60S ribosomal protein L21-A