J3_4V7R_075

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GUC*GCCUAUCGAUCC*GGUGCC

Length

21 nucleotides

Bulged bases

4V7R|1|D1|C|2760, 4V7R|1|D1|C|2797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7R_075 not in the Motif Atlas

Homologous match to J3_8P9A_061

Geometric discrepancy: 0.1553

The information below is about J3_8P9A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V7R|1|D1|G|2651
4V7R|1|D1|U|2652
4V7R|1|D1|C|2653
*
4V7R|1|D1|G|2754
4V7R|1|D1|C|2755
4V7R|1|D1|C|2756
4V7R|1|D1|U|2757
4V7R|1|D1|A|2758
4V7R|1|D1|U|2759
4V7R|1|D1|C|2760
4V7R|1|D1|G|2761
4V7R|1|D1|A|2762
4V7R|1|D1|U|2763
4V7R|1|D1|C|2764
4V7R|1|D1|C|2765
*
4V7R|1|D1|G|2793
4V7R|1|D1|G|2794
4V7R|1|D1|U|2795
4V7R|1|D1|G|2796
4V7R|1|D1|C|2797
4V7R|1|D1|C|2798

Current chains

Chain D1

25S ribosomal RNA

Nearby chains

Chain DT

60S ribosomal protein L21-A

Chain DY

60S ribosomal protein L28

Chain Df

60S ribosomal protein L42