J3_4V7R_083
3D structure
- PDB id
- 4V7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 4 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V7R_083 not in the Motif Atlas
- Geometric match to J3_8P9A_046
- Geometric discrepancy: 0.1926
- The information below is about J3_8P9A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
4V7R|1|B1|A|369
4V7R|1|B1|U|370
4V7R|1|B1|G|371
4V7R|1|B1|A|372
4V7R|1|B1|A|373
4V7R|1|B1|A|374
4V7R|1|B1|A|375
4V7R|1|B1|G|376
*
4V7R|1|B1|C|403
4V7R|1|B1|G|404
*
4V7R|1|B3|C|19
4V7R|1|B3|U|20
Current chains
- Chain B1
- 25S ribosomal RNA
- Chain B3
- 5.8S ribosomal RNA
Nearby chains
- Chain BD
- 60S ribosomal protein L4-A
- Chain BX
- 60S ribosomal protein L26-A
- Chain Be
- 60S ribosomal protein L39
Coloring options: