J3_4V7V_048

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

4V7V|1|BA|A|504, 4V7V|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7V_048 not in the Motif Atlas

Homologous match to J3_5J7L_066

Geometric discrepancy: 0.0566

The information below is about J3_5J7L_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V7V|1|BA|G|30
4V7V|1|BA|C|31
*
4V7V|1|BA|G|474
4V7V|1|BA|C|475
4V7V|1|BA|G|476
4V7V|1|BA|A|477
4V7V|1|BA|A|478
4V7V|1|BA|A|479
4V7V|1|BA|A|480
4V7V|1|BA|G|481
4V7V|1|BA|A|482
4V7V|1|BA|A|483
4V7V|1|BA|C|484
*
4V7V|1|BA|G|496
4V7V|1|BA|A|497
4V7V|1|BA|G|498
4V7V|1|BA|U|499
4V7V|1|BA|G|500
4V7V|1|BA|A|501
4V7V|1|BA|A|502
4V7V|1|BA|A|503
4V7V|1|BA|A|504
4V7V|1|BA|A|505
4V7V|1|BA|G|506
4V7V|1|BA|A|507
4V7V|1|BA|A|508
4V7V|1|BA|C|509
4V7V|1|BA|C|510

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24