J3_4V7W_024

3D structure

PDB id

4V7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V7W|1|DA|G|686, 4V7W|1|DA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7W_024 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.085

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V7W|1|DA|C|683
4V7W|1|DA|G|684
4V7W|1|DA|A|685
4V7W|1|DA|G|686
4V7W|1|DA|C|687
4V7W|1|DA|U|688
4V7W|1|DA|A|689
*
4V7W|1|DA|U|773
4V7W|1|DA|A|774
4V7W|1|DA|G|775
*
4V7W|1|DA|C|791
4V7W|1|DA|G|792
4V7W|1|DA|A|793
4V7W|1|DA|G|794

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DD

50S ribosomal protein L2