J3_4V7X_046

3D structure

PDB id

4V7X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V7X|1|BA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7X_046 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0566

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4V7X|1|BA|C|297
4V7X|1|BA|G|298
4V7X|1|BA|A|299
4V7X|1|BA|A|300
4V7X|1|BA|G|301
*
4V7X|1|BA|C|316
4V7X|1|BA|G|317
4V7X|1|BA|C|318
4V7X|1|BA|C|319
4V7X|1|BA|A|320
4V7X|1|BA|G|321
4V7X|1|BA|A|322
4V7X|1|BA|G|323
4V7X|1|BA|A|324
4V7X|1|BA|G|325
*
4V7X|1|BA|C|337
4V7X|1|BA|G|338
4V7X|1|BA|U|339
4V7X|1|BA|A|340
4V7X|1|BA|G|341

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BY

50S ribosomal protein L24