J3_4V7Y_067

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAAC*GGGUCGG*CG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7Y_067 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.0974

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V7Y|1|DA|U|269
4V7Y|1|DA|A|270
4V7Y|1|DA|A|271
4V7Y|1|DA|A|271|||A
4V7Y|1|DA|C|271|||B
*
4V7Y|1|DA|G|271|||V
4V7Y|1|DA|G|271|||W
4V7Y|1|DA|G|271|||X
4V7Y|1|DA|U|271|||Y
4V7Y|1|DA|C|271|||Z
4V7Y|1|DA|G|272
4V7Y|1|DA|G|272|||B
*
4V7Y|1|DA|C|366
4V7Y|1|DA|G|370

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DI

50S ribosomal protein L9