J3_4V7Z_034

3D structure

PDB id

4V7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with telithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4V7Z|1|AA|C|48, 4V7Z|1|AA|A|50, 4V7Z|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V7Z_034 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1056

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V7Z|1|AA|G|46
4V7Z|1|AA|C|47
4V7Z|1|AA|C|48
4V7Z|1|AA|U|49
4V7Z|1|AA|A|50
4V7Z|1|AA|A|51
4V7Z|1|AA|G|52
*
4V7Z|1|AA|U|359
4V7Z|1|AA|A|360
4V7Z|1|AA|G|361
4V7Z|1|AA|G|362
4V7Z|1|AA|A|363
4V7Z|1|AA|A|364
4V7Z|1|AA|U|365
4V7Z|1|AA|C|366
4V7Z|1|AA|U|367
*
4V7Z|1|AA|A|393
4V7Z|1|AA|G|394
4V7Z|1|AA|C|395

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16