J3_4V80_040

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

4V80|1|CA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V80_040 not in the Motif Atlas

Homologous match to J3_6CZR_026

Geometric discrepancy: 0.317

The information below is about J3_6CZR_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.5

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

4V80|1|CA|C|1237
4V80|1|CA|A|1238
4V80|1|CA|A|1239
4V80|1|CA|U|1240
4V80|1|CA|G|1241
*
4V80|1|CA|C|1296
4V80|1|CA|G|1297
4V80|1|CA|U|1298
4V80|1|CA|A|1299
4V80|1|CA|G|1300
4V80|1|CA|U|1301
4V80|1|CA|C|1302
4V80|1|CA|C|1303
*
4V80|1|CA|G|1334
4V80|1|CA|U|1335
4V80|1|CA|C|1336
4V80|1|CA|G|1337

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CM

30S ribosomal protein S13