J3_4V83_009

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V83|1|BA|G|686, 4V83|1|BA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V83_009 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1022

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V83|1|BA|C|683
4V83|1|BA|G|684
4V83|1|BA|A|685
4V83|1|BA|G|686
4V83|1|BA|C|687
4V83|1|BA|U|688
4V83|1|BA|A|689
*
4V83|1|BA|U|773
4V83|1|BA|A|774
4V83|1|BA|G|775
*
4V83|1|BA|C|791
4V83|1|BA|G|792
4V83|1|BA|A|793
4V83|1|BA|G|794

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2