J3_4V83_013

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V83_013 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0736

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V83|1|BA|U|2091
4V83|1|BA|U|2092
4V83|1|BA|G|2093
*
4V83|1|BA|C|2196
4V83|1|BA|U|2197
4V83|1|BA|A|2198
4V83|1|BA|A|2199
4V83|1|BA|C|2205
*
4V83|1|BA|G|2219
4V83|1|BA|G|2224
4V83|1|BA|A|2225
4V83|1|BA|C|2226
4V83|1|BA|A|2227
4V83|1|BA|G|2228

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28