J3_4V83_015

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4V83|1|BA|A|2518, 4V83|1|BA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V83_015 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.1179

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4V83|1|BA|C|2517
4V83|1|BA|A|2518
4V83|1|BA|U|2519
4V83|1|BA|C|2520
*
4V83|1|BA|G|2545
4V83|1|BA|U|2546
4V83|1|BA|U|2547
*
4V83|1|BA|A|2561
4V83|1|BA|U|2562
4V83|1|BA|U|2563
4V83|1|BA|A|2564
4V83|1|BA|A|2565
4V83|1|BA|A|2566
4V83|1|BA|G|2567

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BK

50S ribosomal protein L14