J3_4V83_019

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V83_019 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1754

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

4V83|1|CA|C|990
4V83|1|CA|U|991
4V83|1|CA|U|992
4V83|1|CA|G|993
*
4V83|1|CA|C|1045
4V83|1|CA|A|1046
4V83|1|CA|G|1047
*
4V83|1|CA|C|1210
4V83|1|CA|U|1211
4V83|1|CA|U|1212
4V83|1|CA|A|1213
4V83|1|CA|C|1214
4V83|1|CA|G|1215

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CN

30S ribosomal protein S14 type Z