J3_4V83_068
3D structure
- PDB id
- 4V83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4V83|1|DA|A|2388, 4V83|1|DA|U|2390, 4V83|1|DA|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V83_068 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.1379
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4V83|1|DA|G|2282
4V83|1|DA|C|2283
4V83|1|DA|C|2284
*
4V83|1|DA|G|2384
4V83|1|DA|C|2385
4V83|1|DA|C|2386
4V83|1|DA|U|2387
4V83|1|DA|A|2388
4V83|1|DA|G|2389
4V83|1|DA|U|2390
4V83|1|DA|G|2391
4V83|1|DA|A|2392
4V83|1|DA|A|2393
4V83|1|DA|C|2394
4V83|1|DA|C|2395
*
4V83|1|DA|G|2421
4V83|1|DA|A|2422
4V83|1|DA|U|2423
4V83|1|DA|C|2424
4V83|1|DA|A|2425
4V83|1|DA|A|2426
4V83|1|DA|C|2427
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain D3
- 50S ribosomal protein L33
- Chain D5
- 50S ribosomal protein L35
- Chain DL
- 50S ribosomal protein L15
- Chain DW
- 50S ribosomal protein L27
- Chain DX
- 50S ribosomal protein L28
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