J3_4V84_017

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V84_017 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.196

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4V84|1|CA|C|990
4V84|1|CA|U|991
4V84|1|CA|U|992
4V84|1|CA|G|993
*
4V84|1|CA|C|1045
4V84|1|CA|A|1046
4V84|1|CA|G|1047
*
4V84|1|CA|C|1210
4V84|1|CA|U|1211
4V84|1|CA|U|1212
4V84|1|CA|A|1213
4V84|1|CA|C|1214
4V84|1|CA|G|1215

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CN

30S ribosomal protein S14 type Z