J3_4V84_035

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V84_035 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1658

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V84|1|AA|U|943
4V84|1|AA|G|944
4V84|1|AA|G|945
4V84|1|AA|A|946
*
4V84|1|AA|U|1235
4V84|1|AA|A|1236
4V84|1|AA|C|1237
*
4V84|1|AA|G|1337
4V84|1|AA|G|1338
4V84|1|AA|A|1339
4V84|1|AA|A|1340

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AM

30S ribosomal protein S13

Chain AU

30S ribosomal protein Thx

Chain AV

RNA (34-MER)