J3_4V84_041

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V84_041 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.0689

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

4V84|1|BA|G|30
4V84|1|BA|C|31
*
4V84|1|BA|G|474
4V84|1|BA|U|475
4V84|1|BA|G|476
4V84|1|BA|A|477
4V84|1|BA|A|478
4V84|1|BA|A|479
4V84|1|BA|A|480
4V84|1|BA|G|481
*
4V84|1|BA|C|509
4V84|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24